refactor: implement three-layer agent architecture (agents / prompts / skills)

Layer 1 — src/agents/ (thin agent definitions, no prompt text)
  registry.ts   — AgentConfig, registerAgent(), getAgent(), AGENTS proxy, pick()
  orchestrator.ts, coder.ts, pm.ts, marketing.ts — one file each, just metadata + tool picks
  index.ts      — barrel: imports prompts then agents (correct registration order)

Layer 2 — src/prompts/ (prompt text separated from agent logic)
  loader.ts     — registerPrompt(), resolvePrompt() with {{variable}} substitution
  orchestrator.ts, coder.ts, pm.ts, marketing.ts — prompt templates as registered strings
  orchestrator.ts now uses resolvePrompt('orchestrator', { knowledge }) instead of
  inline SYSTEM_PROMPT const; {{knowledge}} variable injects project memory cleanly.
  agent-runner.ts uses resolvePrompt(config.promptId) per agent turn.

Layer 3 — src/tools/skills.ts (new skills capability)
  list_skills(repo)      — lists .skills/<name>/SKILL.md directories from a Gitea repo
  get_skill(repo, name)  — reads and returns the markdown body of a skill file
  Orchestrator and all agents now have get_skill in their tool sets.
  Orchestrator also has list_skills and references skills in its prompt.

Also fixed:
  - server.ts now passes history + knowledge_context from request body to orchestratorChat()
    (these were being sent by the frontend but silently dropped)
  - server.ts imports PROTECTED_GITEA_REPOS from tools/security.ts (no more duplicate)
  - Deleted src/agents.ts (replaced by src/agents/ directory)

Made-with: Cursor

dist/agents/orchestrator.js

@@ -0,0 +1,17 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+const registry_1 = require("./registry");
+(0, registry_1.registerAgent)({
+    name: 'Orchestrator',
+    description: 'Master coordinator — breaks down goals and delegates to specialist agents',
+    model: 'B',
+    promptId: 'orchestrator',
+    tools: (0, registry_1.pick)([
+        'gitea_create_issue', 'gitea_list_issues', 'gitea_close_issue',
+        'spawn_agent', 'get_job_status',
+        'coolify_list_projects', 'coolify_list_applications', 'coolify_deploy', 'coolify_get_logs',
+        'list_repos', 'list_all_issues', 'list_all_apps', 'get_app_status',
+        'read_repo_file', 'deploy_app', 'save_memory',
+        'list_skills', 'get_skill'
+    ])
+});